SMTL ID : 6z2v.1

CLK3 A319V mutant bound with beta-carboline KH-CARB13 (Cpd 3)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x KHC: (4~{S})-7,8-bis(chloranyl)-9-methyl-1-oxidanylidene-spiro[2,4-dihydropyrido[3,4-b]indole-3,4'-piperidine]-4-carbonitrile(Non-covalent)

KHC.1: 13 residues within 4Å: Chain A: L.38, G.39, V.46, A.60, K.62, F.112, E.113, L.114, L.115, N.164, L.166, V.195, D.196 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.112, A:V.195 Hydrogen bonds: A:D.196, A:D.196 Halogen bonds: A:E.113, A:L.115

1 x K: POTASSIUM ION(Non-covalent)

K.2: 2 residues within 4Å: Chain A: H.215, H.253 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.215, A:H.253

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: H.215, Y.216, C.238, E.242, T.248, L.249, F.250 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.238, A:L.249, A:F.250, A:F.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schroder, M. et al., DFG-1 Residue Controls Inhibitor Binding Mode and Affinity, Providing a Basis for Rational Design of Kinase Inhibitor Selectivity. J.Med.Chem. (2020)

Release Date

2020-07-29

Peptides

Dual specificity protein kinase CLK3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dual specificity protein kinase CLK3

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