SMTL ID : 6z5t.1 (1 other biounit)

SARS-CoV-2 Macrodomain in complex with ADP-ribose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

1 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.1: 20 residues within 4Å: Chain A: D.23, I.24, A.39, N.41, K.45, H.46, G.47, G.48, G.49, V.50, A.51, P.126, L.127, S.129, A.130, G.131, I.132, F.133, A.155, F.157 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:D.23, A:I.24, A:N.41, A:G.47, A:G.49, A:V.50, A:A.51, A:S.129, A:A.130, A:G.131, A:I.132, A:F.133, A:F.157 Water bridges: A:D.23, A:N.41, A:L.127 pi-Stacking: A:F.157, A:F.157

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: K.20, N.21, Y.162 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.9, A:N.21 Water bridges: A:Y.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rack, J.G.M. et al., Viral macrodomains: a structural and evolutionary assessment of the pharmacological potential. Open Biology (2020)

Release Date

2020-12-02

Peptides

Replicase polyprotein 1ab: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Replicase polyprotein 1ab

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