SMTL ID : 6z5u.1

Cryo-EM structure of the A. baumannii MlaBDEF complex bound to APPNHP

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-6-2-mer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 14 residues within 4Å: Chain B: C.221, P.223 Chain J: R.26, S.51, G.52, T.53, G.54, K.55, T.56, T.57, Q.100, E.178, H.211 Ligands: MG.2 11 PLIP interactions: 11 interactions with chain J Hydrogen bonds: J:R.26, J:G.52, J:G.54, J:K.55, J:K.55, J:T.56, J:T.57, J:Q.100, J:H.211, J:H.211 pi-Cation interactions: J:R.26 ANP.4: 14 residues within 4Å: Chain A: D.222, P.223 Chain K: R.26, R.29, S.51, G.52, T.53, G.54, K.55, T.56, T.57, E.178, H.211 Ligands: MG.3 14 PLIP interactions: 13 interactions with chain K, 1 interactions with chain A Hydrogen bonds: K:R.26, K:R.29, K:G.52, K:T.53, K:G.54, K:G.54, K:K.55, K:T.56, K:T.56, K:T.57, K:T.57, K:E.178, K:H.211, A:D.222

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain J: Q.100, E.178 Ligands: ANP.1 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:E.178 MG.3: 4 residues within 4Å: Chain K: T.56, Q.100, E.178 Ligands: ANP.4 2 PLIP interactions: 2 interactions with chain K Metal complexes: K:E.178, K:E.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mann, D. et al., Structure and lipid dynamics in the maintenance of lipid asymmetry inner membrane complex of A. baumannii. Commun Biol (2021)

Release Date

2021-05-05

Peptides

ABC transporter permease: AB
Anti-sigma factor antagonist: CD
MCE family protein: EFGHIL
ABC transporter ATP-binding protein: JK

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
G

G
H

H
I

I
J

L
F

J
K

K
L

Membrane

We predict this structure to be a membrane protein.
Show / Hide

ABC transporter permease

Anti-sigma factor antagonist

MCE family protein

ABC transporter ATP-binding protein

Related Entries With Identical Sequence