SMTL ID : 6z6d.1

Crystal structure of the HK97 bacteriophage large terminase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

17 x BR: BROMIDE ION(Non-covalent)

BR.1: 4 residues within 4Å: Chain A: N.200, V.281, D.464, A.465 Ligand excluded by PLIP BR.2: 3 residues within 4Å: Chain A: G.422, G.424, D.427 Ligand excluded by PLIP BR.3: 1 residues within 4Å: Chain A: N.108 Ligand excluded by PLIP BR.4: 1 residues within 4Å: Chain A: S.215 Ligand excluded by PLIP BR.5: 1 residues within 4Å: Chain A: R.66 Ligand excluded by PLIP BR.6: 2 residues within 4Å: Chain A: K.67, K.70 Ligand excluded by PLIP BR.7: 6 residues within 4Å: Chain A: H.81, E.86, A.87, V.88, T.91, V.140 Ligand excluded by PLIP BR.8: 1 residues within 4Å: Chain A: S.437 Ligand excluded by PLIP BR.9: 3 residues within 4Å: Chain A: S.415, L.416, P.417 Ligand excluded by PLIP BR.10: 1 residues within 4Å: Chain A: I.18 Ligand excluded by PLIP BR.11: 2 residues within 4Å: Chain A: K.70, Q.102 Ligand excluded by PLIP BR.12: 5 residues within 4Å: Chain A: S.146, K.150, T.151, T.152, F.175 Ligand excluded by PLIP BR.13: 4 residues within 4Å: Chain A: K.67, F.249, R.250, S.251 Ligand excluded by PLIP BR.14: 2 residues within 4Å: Chain A: T.283, V.284 Ligand excluded by PLIP BR.15: 3 residues within 4Å: Chain A: K.131, A.144, S.146 Ligand excluded by PLIP BR.16: 2 residues within 4Å: Chain A: R.16, P.85 Ligand excluded by PLIP BR.17: 2 residues within 4Å: Chain A: I.387, L.392 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fung, H.K.H. et al., Structural basis of DNA packaging by a ring-type ATPase from an archetypal viral system. Nucleic Acids Res. (2022)

Release Date

2021-06-09

Peptides

Terminase large subunit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Terminase large subunit