SMTL ID : 6z7f.1

C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH N-(2-(1H-imidazol-4-yl)ethyl)-4-acetamido-3-(benzyloxy)benzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 6 residues within 4Å: Chain A: S.7, L.10, K.11, N.14, M.63 Ligands: PEG.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.11 PEG.2: 3 residues within 4Å: Chain A: K.11, N.14 Ligands: PEG.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.11, A:N.14

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: Q.103, D.104, E.107, F.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.104 EDO.4: 3 residues within 4Å: Chain A: K.62, D.67, E.73 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.62, A:K.62, A:E.73

1 x QB5: N-(2-(1H-imidazol-4-yl)ethyl)-4-acetamido-3-(benzyloxy)benzamide(Non-covalent)

QB5.5: 9 residues within 4Å: Chain A: W.30, P.31, F.32, V.36, L.43, C.85, N.89, V.95, M.98 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.30, A:W.30, A:P.31, A:F.32, A:V.36, A:L.43, A:V.95, A:V.95 Hydrogen bonds: A:N.89 Water bridges: A:N.89, A:D.94, A:D.94, A:D.94, A:D.94, A:D.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Preston, A. et al., Design and Synthesis of a Highly Selective andIn Vivo-Capable Inhibitor of the Second Bromodomain of the Bromodomain and Extra Terminal Domain Family of Proteins. J.Med.Chem. (2020)

Release Date

2020-07-29

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Bromodomain-containing protein 2

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