SMTL ID : 6z7p.1

Composite model of the Caulobacter crescentus S-layer bound to the O-antigen of lipopolysaccharide

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x BMA- MRH- MRH- BMA- MRH- MRH- BMA- MRH- MRH: 4-acetamido-4,6-dideoxy-alpha-D-mannopyranose-(1-3)-4-acetamido-4,6-dideoxy-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-3)-4-acetamido-4,6-dideoxy-alpha-D-mannopyranose-(1-3)-4-acetamido-4,6-dideoxy-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-3)-4-acetamido-4,6-dideoxy-alpha-D-mannopyranose-(1-3)-4-acetamido-4,6-dideoxy-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose

BMA-MRH-MRH-BMA-MRH-MRH-BMA-MRH-MRH.1: 18 residues within 4Å: Chain A: Y.64, P.72, S.73, G.76, L.80, N.86, N.88, Y.94, Y.95, F.98, N.106, N.110, A.115, G.116, A.117, N.178, T.179, P.180 No protein-ligand interaction detected (PLIP)

22 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: G.289, A.290, G.291, D.293, G.314, E.316 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.289, A:A.290, A:D.293, A:G.314, A:E.316 CA.3: 7 residues within 4Å: Chain A: T.263, A.264, N.265, D.267, G.288, A.290, D.293 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.265, A:D.267, A:D.267, A:G.288, A:D.293 CA.4: 6 residues within 4Å: Chain A: T.254, G.256, D.258, T.279, T.281, D.284 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:T.254, A:G.256, A:D.258, A:T.279, A:D.284 CA.5: 2 residues within 4Å: Chain A: L.531, D.561 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:L.531, A:D.561, A:D.561 CA.6: 4 residues within 4Å: Chain A: A.558, A.559, D.561, D.585 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:A.558, A:D.561, A:D.585, A:D.585 CA.7: 8 residues within 4Å: Chain A: G.633, A.634, G.635, D.637, M.650, G.651, A.652, D.655 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.633, A:G.635, A:D.637, A:M.650, A:D.655 CA.8: 8 residues within 4Å: Chain A: G.651, A.652, G.653, D.655, G.672, G.673, D.674, D.677 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.651, A:D.655, A:G.672, A:D.674, A:D.677 CA.9: 6 residues within 4Å: Chain A: G.673, D.674, G.675, D.677, G.696, E.698 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.673, A:G.675, A:D.677, A:G.696, A:E.698 CA.10: 6 residues within 4Å: Chain A: A.756, T.757, G.758, D.761, G.782, E.784 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:A.756, A:G.758, A:D.761, A:G.782, A:E.784 CA.11: 5 residues within 4Å: Chain A: S.770, D.792, N.794, T.796, H.798 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:S.770, A:D.792, A:D.792, A:T.796 CA.12: 7 residues within 4Å: Chain A: G.863, A.864, G.865, D.867, G.882, A.883, D.886 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.863, A:G.865, A:D.867, A:A.883, A:D.886 CA.13: 8 residues within 4Å: Chain A: G.882, A.883, G.884, D.886, G.899, G.900, T.901, D.904 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:G.884, A:D.886, A:T.901, A:D.904 CA.14: 6 residues within 4Å: Chain A: G.899, G.900, T.901, G.902, D.904, D.927 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:G.900, A:G.902, A:D.904, A:D.927 CA.15: 6 residues within 4Å: Chain A: S.872, A.875, D.877, T.891, G.892, D.895 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:S.872, A:A.875, A:D.877, A:G.892, A:D.895 CA.16: 6 residues within 4Å: Chain A: A.965, G.967, D.989, S.991, A.992, G.993 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:A.965, A:G.967, A:D.989, A:D.989, A:G.993 CA.17: 3 residues within 4Å: Chain A: R.528, A.530, E.557 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.557, A:E.557 CA.18: 4 residues within 4Å: Chain A: F.688, S.689, D.691, F.694 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:F.694 CA.19: 7 residues within 4Å: Chain A: L.780, G.782, V.783, A.806, T.807, S.808, A.809 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:V.783 CA.20: 6 residues within 4Å: Chain A: D.907, I.908, N.909, D.930, V.932, G.933 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.907 CA.21: 5 residues within 4Å: Chain A: S.83, N.86, T.87, D.89, D.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:S.83, A:N.86, A:D.89, A:D.92 CA.22: 3 residues within 4Å: Chain A: L.16, D.78, D.82 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:L.16, A:D.82, A:D.82 CA.23: 3 residues within 4Å: Chain A: D.221, D.224, A.226 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.221, A:D.221, A:D.224, A:D.224, A:A.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

von Kuegelgen, A. et al., In Situ Structure of an Intact Lipopolysaccharide-Bound Bacterial Surface Layer. Cell (2020)

Release Date

2020-07-15

Peptides

S-layer protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

S-layer protein