SMTL ID : 6z8p.1

C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH GSK973

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: Q.103, D.104, E.107, F.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.104 EDO.2: 3 residues within 4Å: Chain A: K.62, D.67, E.73 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.62, A:K.62, A:E.73 EDO.3: 4 residues within 4Å: Chain A: K.87, Y.88, N.89, P.90 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.87

1 x 1PG: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL(Non-covalent)

1PG.4: 7 residues within 4Å: Chain A: S.7, L.10, K.11, N.14, M.63, E.64, R.66 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.66 Hydrogen bonds: A:K.11 Water bridges: A:R.66

1 x QC8: (2~{S},3~{S})-2-(fluoranylmethyl)-~{N}7-methyl-~{N}5-[(1~{R},5~{S})-3-oxabicyclo[3.1.0]hexan-6-yl]-3-phenyl-2,3-dihydro-1-benzofuran-5,7-dicarboxamide(Non-covalent)

QC8.5: 11 residues within 4Å: Chain A: W.30, P.31, F.32, V.36, L.43, Y.88, N.89, P.90, H.93, V.95, M.98 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.30, A:L.43, A:Y.88, A:V.95, A:V.95 Hydrogen bonds: A:P.31, A:N.89, A:N.89 pi-Stacking: A:H.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Preston, A. et al., GSK973 Is an Inhibitor of the Second Bromodomains (BD2s) of the Bromodomain and Extra-Terminal (BET) Family. Acs Med.Chem.Lett. (2020)

Release Date

2020-10-21

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Bromodomain-containing protein 2

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