SMTL ID : 6z9h.1 (1 other biounit)

Escherichia coli D-2-deoxyribose-5-phosphate aldolase - C47V/G204A/S239D mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: L.27, V.80, F.83, D.109, K.174, S.176, T.177 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.27, A:V.80, A:F.83, A:K.174

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 2 residues within 4Å: Chain A: K.133, G.169 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.133, A:A.170 Water bridges: A:G.169, A:T.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Voutilainen, S. et al., Substrate specificity of 2-deoxy-D-ribose 5-phosphate aldolase (DERA) assessed by different protein engineering and machine learning methods. Appl.Microbiol.Biotechnol. (2020)

Release Date

2020-11-18

Peptides

Deoxyribose-phosphate aldolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Deoxyribose-phosphate aldolase

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