SMTL ID : 6z9i.2 (1 other biounit)

Escherichia coli D-2-deoxyribose-5-phosphate aldolase - N21K mutant complex with reaction products

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: V.73, F.76, D.102, I.139, K.167, S.169, T.170 Ligands: G3H.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.73, A:F.76, A:I.139, A:K.167

1 x G3H: GLYCERALDEHYDE-3-PHOSPHATE(Non-covalent)

G3H.2: 12 residues within 4Å: Chain A: T.18, K.167, T.170, G.171, A.203, G.204, G.205, R.207, G.236, A.237, S.238 Ligands: EDO.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.170, A:G.204, A:G.205, A:S.238, A:S.239 Water bridges: A:V.206, A:R.207 Salt bridges: A:R.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Voutilainen, S. et al., Substrate specificity of 2-deoxy-D-ribose 5-phosphate aldolase (DERA) assessed by different protein engineering and machine learning methods. Appl.Microbiol.Biotechnol. (2020)

Release Date

2020-11-18

Peptides

Deoxyribose-phosphate aldolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Deoxyribose-phosphate aldolase

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