SMTL ID : 6z9l.1

Enterococcal PrgA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.06 Å

Oligo State

monomer

Ligands

2 x ALA- ALA- ALA- ALA- ALA- ALA- ALA- ALA- ALA: Poly-alanine peptide(Non-covalent)

ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA.1: 8 residues within 4Å: Chain A: N.74, K.75, L.78, M.707, L.710, K.714 Ligands: ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA.2, ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.710, A:K.714 Hydrogen bonds: A:K.714 ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA.2: 7 residues within 4Å: Chain A: K.75, L.78, D.79, Q.82, T.86 Ligands: ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA.1, ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA.1 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.78 Hydrogen bonds: A:Q.82

14 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: K.276, T.316 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.276 SO4.4: 2 residues within 4Å: Chain A: K.324, Y.426 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.426, A:Y.426 Salt bridges: A:K.324 SO4.5: 4 residues within 4Å: Chain A: Q.230, V.233, T.234, K.237 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.230 Salt bridges: A:K.237 SO4.6: 2 residues within 4Å: Chain A: K.203, K.207 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.203, A:K.207 SO4.7: 4 residues within 4Å: Chain A: N.659, Q.662, V.663, K.666 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.666 SO4.8: 4 residues within 4Å: Chain A: V.326, W.328, E.340, K.425 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.340 Salt bridges: A:K.425 SO4.9: 1 residues within 4Å: Chain A: K.184 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.184 SO4.10: 3 residues within 4Å: Chain A: Q.536, Q.537, N.540 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.536, A:N.540, A:N.540 SO4.11: 5 residues within 4Å: Chain A: E.319, N.323, E.340, K.425, Q.429 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.323, A:E.340, A:Q.429, A:Q.429 Salt bridges: A:K.425 SO4.12: 4 residues within 4Å: Chain A: K.279, V.343, E.347, K.502 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.279, A:K.502 SO4.13: 2 residues within 4Å: Chain A: N.420, K.422 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.420 Salt bridges: A:K.422 SO4.14: 2 residues within 4Å: Chain A: T.625, K.628 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.628 SO4.15: 3 residues within 4Å: Chain A: S.472, I.473, S.474 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.472, A:S.472, A:I.473 SO4.16: 2 residues within 4Å: Chain A: T.267, N.270 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmitt, A. et al., Enterococcal PrgA Extends Far Outside the Cell and Provides Surface Exclusion to Protect against Unwanted Conjugation. J.Mol.Biol. (2020)

Release Date

2020-09-16

Peptides

PrgA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PrgA