SMTL ID : 6zb0.1

C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 1-benzyl-N-methyl-2-oxo-1,2-dihydropyridine-3-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: Q.103, D.104, E.107, F.108 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.104 Water bridges: A:Q.103, A:E.107

1 x QCW: ~{N}-methyl-2-oxidanylidene-1-(phenylmethyl)pyridine-3-carboxamide(Non-covalent)

QCW.2: 8 residues within 4Å: Chain A: W.30, P.31, F.32, V.36, L.43, N.89, H.93, V.95 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.30, A:P.31, A:L.43, A:V.95 Hydrogen bonds: A:P.31, A:N.89

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 5 residues within 4Å: Chain A: K.87, Y.88, N.89, P.90, P.91 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seal, J.T. et al., The Optimization of a Novel, Weak Bromo and Extra Terminal Domain (BET) Bromodomain Fragment Ligand to a Potent and Selective Second Bromodomain (BD2) Inhibitor. J.Med.Chem. (2020)

Release Date

2020-08-05

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Bromodomain-containing protein 2

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