SMTL ID : 6zc6.1

Small-molecule inhibitors of the PDZ domain of Dishevelled proteins interrupt Wnt signalling

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

2 x QEN: 5-bromanyl-2-(naphthalen-2-ylsulfonylamino)benzoic acid(Non-covalent)

QEN.1: 12 residues within 4Å: Chain A: F.18, L.19, G.20, I.21, M.41, V.75, L.78, R.79, V.82, H.83 Ligands: QEN.2, EDO.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.18, A:L.78 Hydrogen bonds: A:L.19, A:G.20, A:I.21, A:I.21 QEN.2: 8 residues within 4Å: Chain A: Y.16, N.17, F.18, G.20, M.41, G.43, G.44 Ligands: QEN.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.18 Hydrogen bonds: A:N.17, A:F.18, A:G.43

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 1 residues within 4Å: Chain A: F.18 No protein-ligand interaction detected (PLIP) EDO.4: 2 residues within 4Å: Chain A: I.21 Ligands: QEN.1 No protein-ligand interaction detected (PLIP) EDO.5: 4 residues within 4Å: Chain A: V.24, I.37, G.38, G.55 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roske, Y. et al., Small-molecule inhibitors of the PDZ domain of Dishevelled proteins interrupt Wnt signalling. J.Magn.Reson. (2021)

Release Date

2021-06-23

Peptides

Segment polarity protein dishevelled homolog DVL-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Segment polarity protein dishevelled homolog DVL-3

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