SMTL ID : 6zcl.4 (3 other biounits)

Coxsackievirus B3 in complex with capsid binder compound 17

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x FHK: 4-[[4-[1,3-bis(oxidanylidene)isoindol-2-yl]phenyl]sulfonylamino]benzoic acid(Non-covalent)

FHK.1: 8 residues within 4Å: Chain A: C.61, F.64, E.66, R.222 Chain C: Q.233, Q.234, N.235, F.236 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:F.236, A:F.64 Hydrogen bonds: C:Q.233 pi-Stacking: C:F.236, A:F.64 Salt bridges: A:R.222

1 x MYR: MYRISTIC ACID(Covalent)

MYR.2: 3 residues within 4Å: Chain D: G.1, A.2, Y.31 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:Y.31, D:Y.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Flatt, J.W. et al., Identification of a conserved virion-stabilizing network inside the interprotomer pocket of enteroviruses. Commun Biol (2021)

Release Date

2021-03-17

Peptides

capsid protein VP1: A
capsid protein VP2: B
capsid protein VP3: C
capsid protein VP4: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

capsid protein VP1

capsid protein VP2

capsid protein VP3

capsid protein VP4

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