SMTL ID : 6zd4.1 (1 other biounit)

Crystal structure of YTHDC1 S378A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.125, E.126 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.126 Salt bridges: A:R.125 SO4.2: 2 residues within 4Å: Chain A: G.18, K.21 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.18 Water bridges: A:G.18, A:G.18 Salt bridges: A:K.21 SO4.3: 3 residues within 4Å: Chain A: S.93, H.94, H.95 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.95 Salt bridges: A:H.94, A:H.95 SO4.4: 2 residues within 4Å: Chain A: R.149, D.150 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Atomistic and Thermodynamic Analysis of N6-Methyladenosine (m 6 A) Recognition by the Reader Domain of YTHDC1. J Chem Theory Comput (2021)

Release Date

2021-01-13

Peptides

YTH domain containing 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

YTH domain containing 1

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