SMTL ID : 6zd9.1 (1 other biounit)

Crystal structure of YTHDC1 apo purified using GST tag

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

monomer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 2 residues within 4Å: Chain A: S.318, P.319 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.316, A:G.317

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: G.238, T.239, S.240, K.241 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.238, A:S.240, A:S.240, A:K.241 Water bridges: A:L.242 Salt bridges: A:K.241 SO4.3: 2 residues within 4Å: Chain A: H.314, H.315 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.315 Salt bridges: A:H.314

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Atomistic and Thermodynamic Analysis of N6-Methyladenosine (m 6 A) Recognition by the Reader Domain of YTHDC1. J Chem Theory Comput (2021)

Release Date

2020-07-29

Peptides

YTHDC1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

YTHDC1

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