SMTL ID : 6zdk.1

Structure of the catalytic domain of human endo-alpha-mannosidase MANEA in complex with HEPES and hexatungstotellurate(VI) TEW

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 10 residues within 4Å: Chain A: Y.28, W.30, Y.109, D.115, E.116, H.142, E.144, P.145, Y.188, Y.243 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.28, A:Y.28, A:Y.109, A:E.116 Water bridges: A:N.117, A:N.117 Salt bridges: A:E.144, A:E.144

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

3 x TEW: 6-tungstotellurate(VI)(Non-covalent)(Non-functional Binders)

TEW.3: 7 residues within 4Å: Chain A: Y.174, T.176, K.177, T.178, A.374, L.375, D.376 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Y.174, A:K.175, A:K.177, A:K.177, A:T.178, A:T.178, A:L.375, A:D.376, A:D.376 Water bridges: A:R.370 TEW.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) TEW.5: 1 residues within 4Å: Chain A: K.197 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sobala, L.F. et al., Structure of human endo-alpha-1,2-mannosidase (MANEA), an antiviral host-glycosylation target. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-11-18

Peptides

Glycoprotein endo-alpha-1,2-mannosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Glycoprotein endo-alpha-1,2-mannosidase

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