SMTL ID : 6zea.1

Strictosidine Synthase from Catharanthus roseus in complex with racemic 1-methyl-2,3,4,9-tetrahydro-1H-beta-carboline

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: T.127, E.188, R.233, Q.287 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.127, A:E.188, A:R.233, A:R.233, A:Q.287 Water bridges: A:T.20, A:T.20, A:Q.130, A:K.232 EDO.2: 6 residues within 4Å: Chain A: Q.88, Y.90, V.100, L.111, Y.167, P.169 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.88, A:Y.90 Water bridges: A:Y.90, A:Y.90 EDO.3: 8 residues within 4Å: Chain A: V.128, D.129, Q.130, I.189, S.190, A.191, G.193, R.233 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.128, A:Q.130, A:R.131, A:A.191, A:G.193, A:R.233 EDO.4: 4 residues within 4Å: Chain A: Q.110, L.111, A.112, T.113 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.111

1 x QGH: (1~{R})-1-methyl-2,3,4,9-tetrahydro-1~{H}-pyrido[3,4-b]indole(Non-covalent)

QGH.5: 9 residues within 4Å: Chain A: W.122, Y.124, V.140, V.151, I.154, M.155, V.183, F.201 Ligands: QGK.6 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.122, A:V.140, A:V.151, A:I.154, A:V.183, A:F.201, A:F.201 Water bridges: A:N.230, A:E.284

1 x QGK: (1~{S})-1-methyl-2,3,4,9-tetrahydro-1~{H}-pyrido[3,4-b]indole(Non-covalent)

QGK.6: 9 residues within 4Å: Chain A: W.122, Y.124, V.140, V.151, I.154, M.155, V.183, F.201 Ligands: QGH.5 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.122, A:V.140, A:V.151, A:I.154, A:V.183, A:F.201, A:F.201 Water bridges: A:E.284, A:E.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eger, E. et al., Strictosidine Synthase from Catharanthus roseus in complex with racemic 1-methyl-2,3,4,9-tetrahydro-1H-beta-carboline. To Be Published

Release Date

2020-09-02

Peptides

Strictosidine synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Strictosidine synthase