SMTL ID : 6zfn.1

Structure of an inactive E404Q variant of the catalytic domain of human endo-alpha-mannosidase MANEA in complex with 1-methyl alpha-1,2-mannobiose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x MMA- MAN: alpha-D-mannopyranose-(1-2)-methyl alpha-D-mannopyranoside(Non-covalent)

MMA-MAN.1: 13 residues within 4Å: Chain A: Y.188, D.189, Y.191, V.224, F.244, F.249, T.250, Y.280, D.282, R.286, W.288, N.289, E.327 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.282, A:R.286, A:N.289, A:D.189, A:Y.191 Water bridges: A:R.286

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: H.16, M.17, P.18, L.19, R.97, N.136 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.19, A:N.136 Water bridges: A:R.97, A:R.97 Salt bridges: A:H.16, A:R.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sobala, L.F. et al., Structure of human endo-alpha-1,2-mannosidase (MANEA), an antiviral host-glycosylation target. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-11-18

Peptides

Glycoprotein endo-alpha-1,2-mannosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Glycoprotein endo-alpha-1,2-mannosidase

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