SMTL ID : 6zfx.1

hSARM1 GraFix-ed

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.88 Å

Oligo State

homo-octamer

Ligands

16 x S1N: (~{E})-4-methylnon-4-enedial(Covalent)

S1N.1: 9 residues within 4Å: Chain A: G.386, K.393, V.403, P.404, P.406 Chain H: D.160, R.164, H.196, S.197 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain A Hydrogen bonds: H:R.164 Hydrophobic interactions: A:K.393 S1N.2: 2 residues within 4Å: Chain A: K.430, K.460 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.430, A:K.460 S1N.3: 9 residues within 4Å: Chain A: D.160, R.164, H.196, S.197 Chain B: G.386, K.393, V.403, P.404, P.406 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:K.393 Hydrogen bonds: A:R.164 S1N.4: 2 residues within 4Å: Chain B: K.430, K.460 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:K.430, B:K.460 S1N.5: 9 residues within 4Å: Chain B: D.160, R.164, H.196, S.197 Chain C: G.386, K.393, V.403, P.404, P.406 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:K.393 Hydrogen bonds: B:R.164 S1N.6: 2 residues within 4Å: Chain C: K.430, K.460 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:K.430, C:K.460 S1N.7: 9 residues within 4Å: Chain C: D.160, R.164, H.196, S.197 Chain D: G.386, K.393, V.403, P.404, P.406 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:R.164 Hydrophobic interactions: D:K.393 S1N.8: 2 residues within 4Å: Chain D: K.430, K.460 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:K.430, D:K.460 S1N.9: 9 residues within 4Å: Chain D: D.160, R.164, H.196, S.197 Chain E: G.386, K.393, V.403, P.404, P.406 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain E Hydrogen bonds: D:R.164 Hydrophobic interactions: E:K.393 S1N.10: 2 residues within 4Å: Chain E: K.430, K.460 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:K.430, E:K.460 S1N.11: 9 residues within 4Å: Chain E: D.160, R.164, H.196, S.197 Chain F: G.386, K.393, V.403, P.404, P.406 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain E Hydrophobic interactions: F:K.393 Hydrogen bonds: E:R.164 S1N.12: 2 residues within 4Å: Chain F: K.430, K.460 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:K.430, F:K.460 S1N.13: 9 residues within 4Å: Chain F: D.160, R.164, H.196, S.197 Chain G: G.386, K.393, V.403, P.404, P.406 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain G Hydrogen bonds: F:R.164 Hydrophobic interactions: G:K.393 S1N.14: 2 residues within 4Å: Chain G: K.430, K.460 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:K.430, G:K.460 S1N.15: 9 residues within 4Å: Chain G: D.160, R.164, H.196, S.197 Chain H: G.386, K.393, V.403, P.404, P.406 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain G Hydrophobic interactions: H:K.393 Hydrogen bonds: G:R.164 S1N.16: 2 residues within 4Å: Chain H: K.430, K.460 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:K.430, H:K.460

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sporny, M. et al., Structural basis for SARM1 inhibition and activation under energetic stress. Elife (2020)

Release Date

2020-11-18

Peptides

NAD(+) hydrolase SARM1: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

NAD(+) hydrolase SARM1

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