SMTL ID : 6zg0.1

SARM1 SAM1-2 domains

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-octamer

Ligands

17 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: K.430, S.434, L.457, G.458 Ligand excluded by PLIP EDO.3: 5 residues within 4Å: Chain A: G.427, K.430, Y.431, R.467 Chain B: Q.439 Ligand excluded by PLIP EDO.4: 3 residues within 4Å: Chain B: L.446, G.506, C.529 Ligand excluded by PLIP EDO.5: 8 residues within 4Å: Chain B: A.479, N.480, Y.481, S.482, D.485, N.488, A.490, R.501 Ligand excluded by PLIP EDO.9: 5 residues within 4Å: Chain B: L.526, H.532, R.537 Chain C: Q.523, E.527 Ligand excluded by PLIP EDO.10: 5 residues within 4Å: Chain B: K.430, Y.431, S.434, L.457, G.458 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain C: S.515, L.548, H.549, S.550 Ligand excluded by PLIP EDO.13: 2 residues within 4Å: Chain C: H.518, R.519 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain C: W.422, E.471, E.474, L.475 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain D: G.427, F.428, Y.431, R.467 Chain E: Q.439 Ligand excluded by PLIP EDO.18: 2 residues within 4Å: Chain D: D.491, R.514 Ligand excluded by PLIP EDO.19: 5 residues within 4Å: Chain D: K.430, Y.431, S.434, L.457, G.458 Ligand excluded by PLIP EDO.20: 4 residues within 4Å: Chain D: E.450, R.465 Chain E: E.451 Ligands: EDO.21 Ligand excluded by PLIP EDO.21: 8 residues within 4Å: Chain D: Q.454, K.460, G.462, R.465 Chain E: E.451, T.455, D.456 Ligands: EDO.20 Ligand excluded by PLIP EDO.22: 5 residues within 4Å: Chain D: R.467, R.470 Chain E: Q.439, D.441, L.444 Ligand excluded by PLIP EDO.23: 7 residues within 4Å: Chain D: E.522, G.534, R.537 Chain E: Q.523, Q.524, E.527, D.528 Ligand excluded by PLIP EDO.25: 4 residues within 4Å: Chain E: S.461 Chain F: Q.438, T.455, D.456 Ligand excluded by PLIP

8 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 5 residues within 4Å: Chain A: C.484, Y.505, V.508, S.509 Chain H: R.499 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.509 BME.7: 2 residues within 4Å: Chain B: C.484, Y.505 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.509 BME.11: 3 residues within 4Å: Chain C: C.484, Y.505, S.509 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.509 BME.17: 4 residues within 4Å: Chain C: R.499 Chain D: C.484, Y.505, S.509 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.499 BME.24: 3 residues within 4Å: Chain E: C.484, Y.505, S.509 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:S.509 BME.26: 4 residues within 4Å: Chain F: C.484, Y.505, V.508, S.509 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:V.508 BME.27: 3 residues within 4Å: Chain G: C.484, V.508, S.509 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:S.509 BME.28: 4 residues within 4Å: Chain H: C.484, Y.505, V.508, S.509 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:S.509

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 7 residues within 4Å: Chain B: T.473, R.499, Q.502, Y.503, L.533, H.536 Chain C: S.509 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.503 PEG.16: 8 residues within 4Å: Chain D: A.479, N.480, Y.481, S.482, D.485, N.488, A.490, R.501 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Y.481, D:S.482, D:R.501

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.8: 10 residues within 4Å: Chain B: P.404, R.405, P.406, P.409, W.414, E.418, T.421, W.422, Q.425, L.475 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:W.422

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sporny, M. et al., Structural basis for SARM1 inhibition and activation under energetic stress. Elife (2020)

Release Date

2020-11-11

Peptides

NAD(+) hydrolase SARM1: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

NAD(+) hydrolase SARM1

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