SMTL ID : 6zh5.1

Folding of an iron binding peptide in response to sedimentation is resolved using ferritin as a nano-reactor

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-24-mer

Ligands

16 x FE: FE (III) ION(Non-covalent)

FE.1: 3 residues within 4Å: Chain B: E.151 Chain E: E.151 Chain T: E.151 3 PLIP interactions: 1 interactions with chain E, 1 interactions with chain B, 1 interactions with chain T Metal complexes: E:E.151, B:E.151, T:E.151 FE.2: 5 residues within 4Å: Chain B: C.147, E.151 Chain E: C.147, E.151 Chain T: E.151 No protein-ligand interaction detected (PLIP) FE.3: 3 residues within 4Å: Chain C: E.151 Chain L: E.151 Chain X: E.151 3 PLIP interactions: 1 interactions with chain L, 1 interactions with chain X, 1 interactions with chain C Metal complexes: L:E.151, X:E.151, C:E.151 FE.4: 3 residues within 4Å: Chain F: E.151 Chain P: E.151 Chain U: E.151 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain P, 1 interactions with chain U Metal complexes: F:E.151, P:E.151, U:E.151 FE.5: 4 residues within 4Å: Chain F: E.151 Chain P: E.151 Chain U: C.147, E.151 No protein-ligand interaction detected (PLIP) FE.6: 5 residues within 4Å: Chain G: E.151 Chain K: C.147, E.151 Chain R: C.147, E.151 No protein-ligand interaction detected (PLIP) FE.7: 3 residues within 4Å: Chain G: E.151 Chain K: E.151 Chain R: E.151 3 PLIP interactions: 1 interactions with chain R, 1 interactions with chain K, 1 interactions with chain G Metal complexes: R:E.151, K:E.151, G:E.151 FE.8: 3 residues within 4Å: Chain H: E.151 Chain N: E.151 Chain O: E.151 3 PLIP interactions: 1 interactions with chain O, 1 interactions with chain N, 1 interactions with chain H Metal complexes: O:E.151, N:E.151, H:E.151 FE.9: 4 residues within 4Å: Chain H: C.147, E.151 Chain N: E.151 Chain O: E.151 No protein-ligand interaction detected (PLIP) FE.10: 3 residues within 4Å: Chain I: E.151 Chain Q: E.151 Chain S: E.151 3 PLIP interactions: 1 interactions with chain Q, 1 interactions with chain I, 1 interactions with chain S Metal complexes: Q:E.151, I:E.151, S:E.151 FE.11: 3 residues within 4Å: Chain A: E.151 Chain J: E.151 Chain W: E.151 3 PLIP interactions: 1 interactions with chain W, 1 interactions with chain J, 1 interactions with chain A Metal complexes: W:E.151, J:E.151, A:E.151 FE.12: 6 residues within 4Å: Chain I: C.147, E.151 Chain Q: C.147, E.151 Chain S: C.147, E.151 No protein-ligand interaction detected (PLIP) FE.13: 3 residues within 4Å: Chain D: E.151 Chain M: E.151 Chain V: E.151 3 PLIP interactions: 1 interactions with chain M, 1 interactions with chain V, 1 interactions with chain D Metal complexes: M:E.151, V:E.151, D:E.151 FE.14: 6 residues within 4Å: Chain D: C.147, E.151 Chain M: C.147, E.151 Chain V: C.147, E.151 No protein-ligand interaction detected (PLIP) FE.15: 5 residues within 4Å: Chain A: C.147, E.151 Chain J: C.147, E.151 Chain W: E.151 No protein-ligand interaction detected (PLIP) FE.16: 6 residues within 4Å: Chain C: C.147, E.151 Chain L: C.147, E.151 Chain X: C.147, E.151 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davidov, G. et al., Folding of an Intrinsically Disordered Iron-Binding Peptide in Response to Sedimentation Revealed by Cryo-EM. J.Am.Chem.Soc. (2020)

Release Date

2021-04-28

Peptides

Ferritin: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
Z

B
A

C
C

D
E

E
G

F
H

G
I

H
J

I
K

J
L

K
M

L
N

M
O

N
P

O
Q

P
R

Q
S

R
T

S
U

T
V

U
W

V
B

W
D

X
F

Ferritin

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