SMTL ID : 6zi8.1

X-ray diffraction structure of bovine insulin at 2.3 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-12-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 8 residues within 4Å: Chain B: H.34 Chain F: H.34 Chain J: H.34 Ligands: CL.2, ZN.5, CL.6, ZN.9, CL.10 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain J, 1 interactions with chain B Metal complexes: F:H.34, J:H.34, B:H.34 ZN.3: 8 residues within 4Å: Chain D: H.34 Chain H: H.34 Chain L: H.34 Ligands: CL.4, ZN.7, CL.8, ZN.11, CL.12 3 PLIP interactions: 1 interactions with chain L, 1 interactions with chain D, 1 interactions with chain H Metal complexes: L:H.34, D:H.34, H:H.34 ZN.5: 8 residues within 4Å: Chain B: H.34 Chain F: H.34 Chain J: H.34 Ligands: ZN.1, CL.2, CL.6, ZN.9, CL.10 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain J, 1 interactions with chain B Metal complexes: F:H.34, J:H.34, B:H.34 ZN.7: 8 residues within 4Å: Chain D: H.34 Chain H: H.34 Chain L: H.34 Ligands: ZN.3, CL.4, CL.8, ZN.11, CL.12 3 PLIP interactions: 1 interactions with chain L, 1 interactions with chain D, 1 interactions with chain H Metal complexes: L:H.34, D:H.34, H:H.34 ZN.9: 8 residues within 4Å: Chain B: H.34 Chain F: H.34 Chain J: H.34 Ligands: ZN.1, CL.2, ZN.5, CL.6, CL.10 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain J, 1 interactions with chain B Metal complexes: F:H.34, J:H.34, B:H.34 ZN.11: 8 residues within 4Å: Chain D: H.34 Chain H: H.34 Chain L: H.34 Ligands: ZN.3, CL.4, ZN.7, CL.8, CL.12 3 PLIP interactions: 1 interactions with chain L, 1 interactions with chain D, 1 interactions with chain H Metal complexes: L:H.34, D:H.34, H:H.34

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 8 residues within 4Å: Chain B: H.34 Chain F: H.34 Chain J: H.34 Ligands: ZN.1, ZN.5, CL.6, ZN.9, CL.10 Ligand excluded by PLIP CL.4: 8 residues within 4Å: Chain D: H.34 Chain H: H.34 Chain L: H.34 Ligands: ZN.3, ZN.7, CL.8, ZN.11, CL.12 Ligand excluded by PLIP CL.6: 8 residues within 4Å: Chain B: H.34 Chain F: H.34 Chain J: H.34 Ligands: ZN.1, CL.2, ZN.5, ZN.9, CL.10 Ligand excluded by PLIP CL.8: 8 residues within 4Å: Chain D: H.34 Chain H: H.34 Chain L: H.34 Ligands: ZN.3, CL.4, ZN.7, ZN.11, CL.12 Ligand excluded by PLIP CL.10: 8 residues within 4Å: Chain B: H.34 Chain F: H.34 Chain J: H.34 Ligands: ZN.1, CL.2, ZN.5, CL.6, ZN.9 Ligand excluded by PLIP CL.12: 8 residues within 4Å: Chain D: H.34 Chain H: H.34 Chain L: H.34 Ligands: ZN.3, CL.4, ZN.7, CL.8, ZN.11 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blum, T.B. et al., Statistically correcting dynamical electron scattering improves the refinement of protein nanocrystals, including charge refinement of coordinated metals. Acta Crystallogr D Struct Biol (2021)

Release Date

2021-01-20

Peptides

Insulin: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

I
A

J
B

K
C

L
D

Insulin