- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x FRU- GAL: beta-D-galactopyranose-(1-4)-beta-D-fructofuranose(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.3: 5 residues within 4Å:- Chain A: D.209, W.550, F.583, D.586
- Ligands: FRU-GAL.1
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.209
NA.4: 2 residues within 4Å:- Chain A: D.653, V.654
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.653, A:D.653, A:V.654
NA.14: 5 residues within 4Å:- Chain B: D.209, W.550, F.583, D.586
- Ligands: FRU-GAL.12
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:W.550
NA.15: 2 residues within 4Å:- Chain B: D.653, V.654
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:V.654
- Water bridges: B:D.653
- 2 x MLI: MALONATE ION(Non-functional Binders)
MLI.5: 4 residues within 4Å:- Chain A: R.798, L.800, R.817
- Chain B: H.123
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Salt bridges: A:R.798, A:R.817, B:H.123
MLI.16: 4 residues within 4Å:- Chain A: H.123
- Chain B: R.798, L.800, R.817
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Salt bridges: B:R.798, B:R.817, A:H.123
- 12 x ACT: ACETATE ION(Non-functional Binders)
ACT.6: 2 residues within 4Å:- Chain A: H.339, R.341
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:H.339, A:R.341
ACT.7: 4 residues within 4Å:- Chain A: P.886, F.902, S.903, L.904
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.902
- Hydrogen bonds: A:S.903
ACT.8: 3 residues within 4Å:- Chain A: L.501, N.502, D.503
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.502, A:N.502, A:D.503
ACT.9: 1 residues within 4Å:- Chain A: W.775
No protein-ligand interaction detected (PLIP)ACT.10: 3 residues within 4Å:- Chain A: R.264, S.299, A.300
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.299
- Salt bridges: A:R.264
ACT.11: 4 residues within 4Å:- Chain A: H.977, R.1000, D.1001, A.1002
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:H.977, A:R.1000
ACT.17: 2 residues within 4Å:- Chain B: H.339, R.341
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:H.339, B:R.341
ACT.18: 4 residues within 4Å:- Chain B: P.886, F.902, S.903, L.904
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:F.902
- Hydrogen bonds: B:S.903
ACT.19: 3 residues within 4Å:- Chain B: L.501, N.502, D.503
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.502, B:N.502, B:D.503
ACT.20: 1 residues within 4Å:- Chain B: W.775
No protein-ligand interaction detected (PLIP)ACT.21: 3 residues within 4Å:- Chain B: R.264, S.299, A.300
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.299
- Salt bridges: B:R.264
ACT.22: 4 residues within 4Å:- Chain B: H.977, R.1000, D.1001, A.1002
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:H.977, B:R.1000
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rutkiewicz, M. et al., Mapping the Transglycosylation Relevant Sites of Cold-Adapted beta-d-Galactosidase fromArthrobactersp. 32cB. Int J Mol Sci (2020)
- Release Date
- 2020-08-05
- Peptides
- Beta-galactosidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x FRU- GAL: beta-D-galactopyranose-(1-4)-beta-D-fructofuranose(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 2 x MLI: MALONATE ION(Non-functional Binders)
- 12 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rutkiewicz, M. et al., Mapping the Transglycosylation Relevant Sites of Cold-Adapted beta-d-Galactosidase fromArthrobactersp. 32cB. Int J Mol Sci (2020)
- Release Date
- 2020-08-05
- Peptides
- Beta-galactosidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A