SMTL ID : 6zk7.1

Crystal Structure of human PYROXD1/FAD complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 27 residues within 4Å: Chain A: V.21, G.22, G.23, G.24, I.25, A.26, V.46, T.47, A.48, K.53, G.91, V.92, C.118, A.119, G.120, A.121, I.136, R.137, D.138, N.327, P.330, G.362, D.363, R.379, L.380, W.381, A.384 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.136, A:D.138 Hydrogen bonds: A:G.22, A:G.23, A:G.23, A:I.25, A:A.26, A:K.53, A:V.92, A:V.92, A:A.121, A:D.138, A:N.327, A:D.363, A:L.380, A:W.381 Salt bridges: A:K.53 pi-Stacking: A:W.381, A:W.381

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Asanovic, I. et al., The oxidoreductase PYROXD1 uses NAD(P) + as an antioxidant to sustain tRNA ligase activity in pre-tRNA splicing and unfolded protein response. Mol.Cell (2021)

Release Date

2021-05-12

Peptides

Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAAA

Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1