SMTL ID : 6zlc.1

Non-specific dsRNA recognition by wildtype H7N1 RNA-binding domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: K.48 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.48 SO4.2: 2 residues within 4Å: Chain A: D.6, S.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.7 Water bridges: A:N.8, A:N.8

4 x NO3: NITRATE ION(Non-functional Binders)

NO3.3: 6 residues within 4Å: Chain A: Q.14, L.56, D.57, V.60, A.61, E.64 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.14, A:D.57 NO3.4: 1 residues within 4Å: Chain B: K.45 No protein-ligand interaction detected (PLIP) NO3.5: 5 residues within 4Å: Chain C: C.7, A.8, U.9 Chain D: U.10, A.11 No protein-ligand interaction detected (PLIP) NO3.6: 5 residues within 4Å: Chain C: U.10, A.11 Chain D: C.7, A.8, U.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wacquiez, A. et al., Structure and Sequence Determinants Governing the Interactions of RNAs with Influenza A Virus Non-Structural Protein NS1. Viruses (2020)

Release Date

2020-10-07

Peptides

Non-structural protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Non-structural protein 1

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