SMTL ID : 6zmv.1 (1 other biounit)

Structure of muramidase from Trichobolus zukalii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: D.6, I.7, S.8, Y.10, Q.11, Y.59, G.188, D.189 Ligands: GOL.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.6, A:S.8, A:Q.11, A:D.189 Water bridges: A:D.189 GOL.2: 10 residues within 4Å: Chain A: D.6, Y.59, F.61, M.93, D.95, E.97, Y.134, Q.179, D.189 Ligands: GOL.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.6, A:Q.179 Water bridges: A:Y.59 GOL.3: 9 residues within 4Å: Chain A: M.96, E.97, Y.98, Y.134, T.135, G.136, W.139, A.159, Y.161 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.134, A:T.135, A:G.136 Water bridges: A:Y.98 GOL.4: 8 residues within 4Å: Chain A: Y.46, R.56, G.82, W.83, S.84, D.86, I.88, T.89 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.56, A:R.56, A:S.84, A:D.86, A:T.89, A:T.89

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: K.124, R.129, Y.130 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.130 Water bridges: A:G.128, A:R.129, A:T.153 Salt bridges: A:K.124, A:R.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moroz, O.V. et al., Fungal GH25 muramidases: New family members with applications in animal nutrition and a crystal structure at 0.78 angstrom resolution. Plos One (2021)

Release Date

2021-07-14

Peptides

muramidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

muramidase

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