SMTL ID : 6zot.1

Crystal structure of YTHDF3 YTH domain in complex with m6A RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

1 x G- 6MZ- C- U: RNA(Non-covalent)

G-6MZ-C-U.1: 21 residues within 4Å: Chain A: K.50, S.51, Y.52, D.56, W.66, C.67, S.68, T.69, V.95, N.96, G.97, W.120, W.125, N.141, T.158, N.159, S.160, R.161, D.162 Chain B: R.148, N.154 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.51, A:Y.52, A:C.67, A:N.96 pi-Stacking: A:Y.52, A:W.125, A:W.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Structural and Dynamic Insights into Redundant Function of YTHDF Proteins. J.Chem.Inf.Model. (2020)

Release Date

2020-10-28

Peptides

YTH domain-containing family protein 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

YTH domain-containing family protein 3