SMTL ID : 6zqj.1

Cryo-EM structure of trimeric prME spike of Spondweni virus

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-6-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain B: P.31, R.33, N.70 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:P.31 NAG.2: 5 residues within 4Å: Chain D: P.31, N.32, R.33, N.70, S.71 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:P.31, D:P.31, D:R.33 NAG.3: 3 residues within 4Å: Chain F: P.31, R.33, N.70 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:P.31, F:P.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Renner, M. et al., Flavivirus maturation leads to the formation of an occupied lipid pocket in the surface glycoproteins. Nat Commun (2021)

Release Date

2021-01-20

Peptides

Genome polyprotein: ACE
prM: BDFGHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
D

E
G

B
B

D
E

F
H

G
I

H
F

I
C

Membrane

We predict this structure to be a membrane protein.
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Genome polyprotein

prM

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