SMTL ID : 6zqk.1 (1 other biounit)

HER2-binding scFv-Fab fusion 841

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: T.277, L.279, S.322, G.323, T.324 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.277, A:S.322 EDO.2: 9 residues within 4Å: Chain A: Q.177, L.187, G.197, V.198, P.199, R.201, F.202, E.221, N.282 No protein-ligand interaction detected (PLIP) EDO.3: 7 residues within 4Å: Chain A: Y.33, R.50, R.59, W.99, Y.105, T.233, T.234 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.50, A:Y.105, A:T.234, A:T.234 EDO.4: 7 residues within 4Å: Chain A: Q.39, A.40, P.41, G.42, K.43 Chain B: T.57 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.42 EDO.5: 11 residues within 4Å: Chain A: Q.39, Y.95, Q.178, K.179, P.180, G.181, K.182, T.225 Chain B: Y.55, T.57 Ligands: EDO.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.181, A:K.182, A:K.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kast, F. et al., Engineering an anti-HER2 biparatopic antibody with a multimodal mechanism of action. Nat Commun (2021)

Release Date

2021-06-30

Peptides

841 heavy chain: A
841 light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

841 heavy chain

841 light chain

Related Entries With Identical Sequence