SMTL ID : 6zrk.1

Crystal structure of H8 haemagglutinin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-FUC.1: 5 residues within 4Å: Chain A: K.133, A.134, N.136, G.140, R.222 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.133 NAG-NAG-BMA-MAN-MAN-FUC.6: 5 residues within 4Å: Chain C: K.133, A.134, N.136, G.140, R.222 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.133 NAG-NAG-BMA-MAN-MAN-FUC.11: 5 residues within 4Å: Chain E: K.133, A.134, N.136, G.140, R.222 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:K.133

9 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: W.124, N.125, N.162, E.163 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain A: H.278, N.289 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain A: T.37, N.296, A.312 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 4 residues within 4Å: Chain C: W.124, N.125, N.162, E.163 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 2 residues within 4Å: Chain C: H.278, N.289 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 3 residues within 4Å: Chain C: T.37, N.296, A.312 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 4 residues within 4Å: Chain E: W.124, N.125, N.162, E.163 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 2 residues within 4Å: Chain E: H.278, N.289 No protein-ligand interaction detected (PLIP) NAG-NAG.14: 3 residues within 4Å: Chain E: T.37, N.296, A.312 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 1 residues within 4Å: Chain A: N.13 No protein-ligand interaction detected (PLIP) NAG.10: 1 residues within 4Å: Chain C: N.13 No protein-ligand interaction detected (PLIP) NAG.15: 1 residues within 4Å: Chain E: N.13 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gamblin, S.J. et al., Hemagglutinin Structure and Activities. Cold Spring Harb Perspect Med (2021)

Release Date

2020-12-02

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C
C

E
C

B
D

D
D

F
D

Hemagglutinin

Hemagglutinin