SMTL ID : 6zsm.1

Crystal structure of rsGCaMP double mutant Ile80His/Val116Ile in the ON state (non-illuminated)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.395, D.397, D.399, Q.401, E.406 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.395, A:Q.401, A:E.406, A:E.406, H2O.3 CA.2: 5 residues within 4Å: Chain A: D.286, D.288, D.290, T.292, E.297 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.286, A:D.290, A:T.292, A:E.297, H2O.5 CA.3: 5 residues within 4Å: Chain A: D.322, D.324, D.326, T.328, E.333 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.322, A:D.324, A:D.326, A:E.333, H2O.2 CA.4: 5 residues within 4Å: Chain A: D.359, D.361, N.363, Y.365, E.370 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.359, A:D.361, A:Y.365, A:E.370, H2O.4 CA.5: 4 residues within 4Å: Chain A: D.324, D.326, D.330 Ligands: FMT.11 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.324, H2O.1, H2O.2, H2O.7, H2O.12

14 x FMT: FORMIC ACID(Non-functional Binders)

FMT.6: 4 residues within 4Å: Chain A: H.77, Y.78, G.106, N.319 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.106, A:N.319 Water bridges: A:N.76, A:H.77 FMT.7: 5 residues within 4Å: Chain A: R.230, E.232, R.243, E.245 Ligands: FMT.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.230, A:R.230 FMT.8: 4 residues within 4Å: Chain A: K.228, R.230, E.245, K.247 No protein-ligand interaction detected (PLIP) FMT.9: 5 residues within 4Å: Chain A: E.140, D.142, I.244, E.245 Ligands: FMT.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.140, A:D.142, A:I.244 FMT.10: 7 residues within 4Å: Chain A: E.128, A.160, S.193, R.194, Y.195, K.200, K.206 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.128, A:A.160, A:Y.195, A:K.200, A:K.206 Water bridges: A:D.203 FMT.11: 4 residues within 4Å: Chain A: D.326, T.328 Ligands: CA.5, FMT.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.326 FMT.12: 3 residues within 4Å: Chain A: D.290, T.292 Ligands: FMT.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.290 Water bridges: A:D.290 FMT.13: 2 residues within 4Å: Chain A: H.148, P.177 2 PLIP interactions: 2 interactions with chain A Water bridges: A:L.176, A:P.177 FMT.14: 5 residues within 4Å: Chain A: Q.82, S.83, K.84, L.99, F.101 No protein-ligand interaction detected (PLIP) FMT.15: 3 residues within 4Å: Chain A: V.124, S.125, Q.201 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.124 FMT.16: 2 residues within 4Å: Chain A: L.25, K.44 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.25, A:K.44 Water bridges: A:L.25, A:K.44 FMT.17: 4 residues within 4Å: Chain A: E.91, K.92, R.93, H.95 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.87, A:R.93 FMT.18: 6 residues within 4Å: Chain A: V.16, I.19, G.20, Q.307, E.353, A.354 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.16, A:E.353 Water bridges: A:Q.307, A:A.354 FMT.19: 2 residues within 4Å: Chain A: P.74, D.75 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.32, A:N.76

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.20: 4 residues within 4Å: Chain A: H.45, R.46, R.340, Y.344 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.46, A:R.46, A:R.340, A:R.340 Water bridges: A:E.26, A:E.26, A:H.45 EDO.21: 5 residues within 4Å: Chain A: R.17, D.346, I.351, A.354, M.411 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.17 Water bridges: A:D.346, A:D.346 EDO.22: 6 residues within 4Å: Chain A: Y.60, Q.61, Q.62, E.216, R.217, T.218 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.62, A:E.216 Water bridges: A:T.218 EDO.23: 3 residues within 4Å: Chain A: R.352, E.353, R.356 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.353 EDO.24: 6 residues within 4Å: Chain A: K.44, R.46, L.56, S.347, E.349, E.350 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.46, A:S.347, A:E.349 Water bridges: A:E.350

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mishra, K. et al., Genetically encoded photo-switchable molecular sensors for optoacoustic and super-resolution imaging. Nat.Biotechnol. (2022)

Release Date

2021-10-27

Peptides

Green fluorescent protein,Green fluorescent protein,Calmodulin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Green fluorescent protein,Green fluorescent protein,Calmodulin

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