SMTL ID : 6zt6.1

X-ray structure of mutated arabinofuranosidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

30 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 8 residues within 4Å: Chain A: D.260, W.263, V.264, K.267, P.395, E.396, E.398, L.399 Ligand excluded by PLIP MPD.2: 6 residues within 4Å: Chain A: V.285, Y.286 Chain F: Y.220, H.221, E.224, I.282 Ligand excluded by PLIP MPD.3: 12 residues within 4Å: Chain A: F.26, E.28, L.30, G.73, C.74, E.176, Y.242, E.298, W.302, L.314, Q.347, M.352 Ligand excluded by PLIP MPD.4: 7 residues within 4Å: Chain A: M.114, E.118, G.121, C.122, E.123, P.124, R.167 Ligand excluded by PLIP MPD.5: 7 residues within 4Å: Chain A: K.15, H.334, R.335, H.336, C.337, D.338, L.383 Ligand excluded by PLIP MPD.6: 6 residues within 4Å: Chain A: K.210, P.232, F.233, M.234, H.235, R.291 Ligand excluded by PLIP MPD.8: 7 residues within 4Å: Chain B: K.15, K.290, H.334, R.335, C.337, D.338, L.383 Ligand excluded by PLIP MPD.9: 8 residues within 4Å: Chain B: D.260, W.263, V.264, K.267, P.395, E.396, E.398, L.399 Ligand excluded by PLIP MPD.10: 6 residues within 4Å: Chain B: Y.220, H.221, E.224, I.282 Chain E: V.285, Y.286 Ligand excluded by PLIP MPD.11: 11 residues within 4Å: Chain B: E.28, L.30, G.73, C.74, E.176, Y.242, E.298, W.302, L.314, Q.347, M.352 Ligand excluded by PLIP MPD.12: 7 residues within 4Å: Chain B: Q.197, K.210, P.232, F.233, M.234, H.235, R.291 Ligand excluded by PLIP MPD.13: 7 residues within 4Å: Chain C: K.228, V.285, Y.286 Chain D: Y.220, H.221, E.224, I.282 Ligand excluded by PLIP MPD.14: 10 residues within 4Å: Chain C: E.28, L.30, G.73, C.74, E.176, Y.242, E.298, W.302, L.314, Q.347 Ligand excluded by PLIP MPD.15: 9 residues within 4Å: Chain C: K.15, G.16, K.290, H.334, R.335, H.336, C.337, D.338, L.383 Ligand excluded by PLIP MPD.16: 7 residues within 4Å: Chain C: Q.197, K.210, P.232, F.233, M.234, H.235, R.291 Ligand excluded by PLIP MPD.17: 8 residues within 4Å: Chain D: D.260, W.263, V.264, K.267, P.395, E.396, E.398, L.399 Ligand excluded by PLIP MPD.18: 6 residues within 4Å: Chain C: Y.220, H.221, E.224, I.282 Chain D: V.285, Y.286 Ligand excluded by PLIP MPD.19: 12 residues within 4Å: Chain D: F.26, E.28, L.30, G.73, C.74, E.176, Y.242, E.298, W.302, L.314, Q.347, M.352 Ligand excluded by PLIP MPD.20: 7 residues within 4Å: Chain D: M.114, E.118, G.121, C.122, E.123, P.124, R.167 Ligand excluded by PLIP MPD.21: 7 residues within 4Å: Chain D: K.15, H.334, R.335, H.336, C.337, D.338, L.383 Ligand excluded by PLIP MPD.22: 6 residues within 4Å: Chain D: K.210, P.232, F.233, M.234, H.235, R.291 Ligand excluded by PLIP MPD.24: 7 residues within 4Å: Chain E: K.15, K.290, H.334, R.335, C.337, D.338, L.383 Ligand excluded by PLIP MPD.25: 8 residues within 4Å: Chain E: D.260, W.263, V.264, K.267, P.395, E.396, E.398, L.399 Ligand excluded by PLIP MPD.26: 6 residues within 4Å: Chain B: V.285, Y.286 Chain E: Y.220, H.221, E.224, I.282 Ligand excluded by PLIP MPD.27: 11 residues within 4Å: Chain E: E.28, L.30, G.73, C.74, E.176, Y.242, E.298, W.302, L.314, Q.347, M.352 Ligand excluded by PLIP MPD.28: 7 residues within 4Å: Chain E: Q.197, K.210, P.232, F.233, M.234, H.235, R.291 Ligand excluded by PLIP MPD.29: 7 residues within 4Å: Chain A: Y.220, H.221, E.224, I.282 Chain F: K.228, V.285, Y.286 Ligand excluded by PLIP MPD.30: 10 residues within 4Å: Chain F: E.28, L.30, G.73, C.74, E.176, Y.242, E.298, W.302, L.314, Q.347 Ligand excluded by PLIP MPD.31: 9 residues within 4Å: Chain F: K.15, G.16, K.290, H.334, R.335, H.336, C.337, D.338, L.383 Ligand excluded by PLIP MPD.32: 7 residues within 4Å: Chain F: Q.197, K.210, P.232, F.233, M.234, H.235, R.291 Ligand excluded by PLIP

2 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.7: 6 residues within 4Å: Chain A: G.86, P.87, R.88, R.91, E.112, N.160 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.88, A:R.88, A:E.112, A:N.160 Water bridges: A:E.89, A:R.91, A:R.91 BTB.23: 6 residues within 4Å: Chain D: G.86, P.87, R.88, R.91, E.112, N.160 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:R.88, D:R.88, D:E.112, D:E.112, D:N.160 Water bridges: D:E.89, D:R.91, D:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, J. et al., Probing the determinants of the transglycosylation/hydrolysis partition in a retaining alpha-l-arabinofuranosidase. N Biotechnol (2021)

Release Date

2021-02-10

Peptides

Alpha-L-arabinofuranosidase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Alpha-L-arabinofuranosidase

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