SMTL ID : 6zt8.1

X-ray structure of mutated arabinofuranosidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-hexamer

Ligands

4 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 6 residues within 4Å: Chain A: R.20, K.64, L.119, L.120, K.376, Q.379 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.64, A:L.119 1PE.4: 4 residues within 4Å: Chain B: R.20, K.64, K.376, Q.379 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.64 1PE.11: 6 residues within 4Å: Chain D: R.20, K.64, L.119, L.120, K.376, Q.379 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:K.64, D:L.119 1PE.14: 4 residues within 4Å: Chain E: R.20, K.64, K.376, Q.379 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:K.64

8 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 2 residues within 4Å: Chain A: G.246, K.268 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.268 PG4.5: 8 residues within 4Å: Chain B: Y.241, P.245, G.246, P.247, V.264, K.267, K.268, F.271 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.241, B:G.246, B:K.267, B:K.268 PG4.6: 7 residues within 4Å: Chain B: K.15, R.335, D.338, L.383, L.384, D.385, T.386 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.384, B:T.386 PG4.8: 6 residues within 4Å: Chain C: Y.241, G.246, W.248, K.267, K.268, F.271 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.268 PG4.12: 2 residues within 4Å: Chain D: G.246, K.268 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:K.268 PG4.15: 8 residues within 4Å: Chain E: Y.241, P.245, G.246, P.247, V.264, K.267, K.268, F.271 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:Y.241, E:Y.241, E:G.246, E:K.267, E:K.268 PG4.16: 7 residues within 4Å: Chain E: K.15, R.335, D.338, L.383, L.384, D.385, T.386 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:L.384, E:T.386 PG4.18: 6 residues within 4Å: Chain F: Y.241, G.246, W.248, K.267, K.268, F.271 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:K.268

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: N.19, D.380 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain B: N.19, D.380 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain C: N.19, D.380 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain D: N.19, D.380 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain E: N.19, D.380 Ligand excluded by PLIP CL.20: 2 residues within 4Å: Chain F: N.19, D.380 Ligand excluded by PLIP

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.9: 4 residues within 4Å: Chain C: R.20, K.64, K.376, Q.379 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.64 PGE.19: 4 residues within 4Å: Chain F: R.20, K.64, K.376, Q.379 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:K.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, J. et al., Probing the determinants of the transglycosylation/hydrolysis partition in a retaining alpha-l-arabinofuranosidase. N Biotechnol (2021)

Release Date

2021-02-10

Peptides

Alpha-L-arabinofuranosidase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Alpha-L-arabinofuranosidase

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