SMTL ID : 6ztb.1

Crystal Structure of human P-Cadherin EC1_EC2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: N.104, H.106, D.136, D.138, N.145, D.197 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.106, A:D.136, A:D.138, A:N.145, A:D.197 CA.2: 6 residues within 4Å: Chain A: E.13, D.69, E.71, D.105, H.106 Ligands: CA.3 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.13, A:D.69, A:E.71, A:D.105, H2O.2, H2O.9 CA.3: 7 residues within 4Å: Chain A: E.13, E.71, D.102, Q.103, D.105, D.138 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.13, A:D.102, A:Q.103, A:D.105, A:D.138

4 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain A: D.136, E.137, D.138 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.136 Water bridges: A:D.136, A:A.140 NA.5: 2 residues within 4Å: Chain A: S.118, V.129 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.118, A:S.118 NA.6: 1 residues within 4Å: Chain A: N.14 No protein-ligand interaction detected (PLIP) NA.7: 3 residues within 4Å: Chain A: E.121, G.180, L.181 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.121, A:G.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sheng, Q. et al., PCA062, a P-cadherin Targeting Antibody-Drug Conjugate, Displays Potent Antitumor Activity Against P-cadherin-expressing Malignancies. Mol.Cancer Ther. (2021)

Release Date

2021-05-05

Peptides

Cadherin-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

Cadherin-3

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