- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.15 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 6 x NO2: NITRITE ION(Non-covalent)
NO2.3: 8 residues within 4Å:- Chain A: D.92, H.94, H.129
- Chain B: H.249, I.251, H.300, L.302
- Ligands: CU.2
No protein-ligand interaction detected (PLIP)NO2.6: 7 residues within 4Å:- Chain A: W.259, A.260, T.261, G.262, K.263, N.266
- Chain B: Q.272
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.263, A:N.266
- Water bridges: A:V.258, A:V.258, A:A.260
NO2.10: 8 residues within 4Å:- Chain B: D.92, H.94, H.129
- Chain C: H.249, I.251, H.300, L.302
- Ligands: CU.9
No protein-ligand interaction detected (PLIP)NO2.13: 7 residues within 4Å:- Chain B: W.259, A.260, T.261, G.262, K.263, N.266
- Chain C: Q.272
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:T.261, B:K.263, B:N.266
- Water bridges: B:V.258, B:V.258, B:A.260
NO2.17: 8 residues within 4Å:- Chain A: H.249, I.251, H.300, L.302
- Chain C: D.92, H.94, H.129
- Ligands: CU.16
No protein-ligand interaction detected (PLIP)NO2.20: 7 residues within 4Å:- Chain A: Q.272
- Chain C: W.259, A.260, T.261, G.262, K.263, N.266
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:T.261, C:K.263, C:N.266
- Water bridges: C:V.258, C:V.258, C:A.260
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 3 residues within 4Å:- Chain A: P.152, R.153, D.154
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:D.154
- Water bridges: A:R.153, A:R.153, A:D.154, A:K.157, A:K.157, A:K.157
- Salt bridges: A:K.157
SO4.5: 3 residues within 4Å:- Chain A: D.182, E.183, K.188
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.183
- Salt bridges: A:K.188
SO4.11: 3 residues within 4Å:- Chain B: P.152, R.153, D.154
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:D.154
- Water bridges: B:R.153, B:R.153, B:D.154, B:K.157, B:K.157, B:K.157
- Salt bridges: B:K.157
SO4.12: 3 residues within 4Å:- Chain B: D.182, E.183, K.188
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.183
- Salt bridges: B:K.188
SO4.18: 3 residues within 4Å:- Chain C: P.152, R.153, D.154
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:D.154
- Water bridges: C:R.153, C:R.153, C:D.154, C:K.157, C:K.157, C:K.157
- Salt bridges: C:K.157
SO4.19: 3 residues within 4Å:- Chain C: D.182, E.183, K.188
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:E.183
- Salt bridges: C:K.188
- 3 x MLI: MALONATE ION(Non-functional Binders)
MLI.7: 5 residues within 4Å:- Chain A: G.219, T.222, F.306, A.311, H.313
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:A.311
- Water bridges: A:G.219, A:G.309, A:A.311
- Salt bridges: A:H.313, A:H.313
MLI.14: 5 residues within 4Å:- Chain B: G.219, T.222, F.306, A.311, H.313
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:A.311
- Water bridges: B:G.219, B:G.309, B:A.311
- Salt bridges: B:H.313, B:H.313
MLI.21: 5 residues within 4Å:- Chain C: G.219, T.222, F.306, A.311, H.313
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:A.311
- Water bridges: C:G.219, C:G.309, C:A.311
- Salt bridges: C:H.313, C:H.313
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hough, M.A. et al., Nature of the copper-nitrosyl intermediates of copper nitrite reductases during catalysis. Chem Sci (2020)
- Release Date
- 2021-06-23
- Peptides
- Copper-containing nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.15 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 6 x NO2: NITRITE ION(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 3 x MLI: MALONATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hough, M.A. et al., Nature of the copper-nitrosyl intermediates of copper nitrite reductases during catalysis. Chem Sci (2020)
- Release Date
- 2021-06-23
- Peptides
- Copper-containing nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A