SMTL ID : 6zxv.2 (1 other biounit)

Structure of Archaeoglobus fulgidus Trm11 m2G10 tRNA methyltransferase enzyme bound to sinefungin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x SFG: SINEFUNGIN(Non-covalent)

SFG.1: 16 residues within 4Å: Chain A: P.197, M.198, G.200, D.219, F.220, I.221, I.224, G.244, D.245, A.246, D.262, Y.263, P.264, Y.265, R.267, L.278 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.200, A:F.220, A:D.245, A:A.246, A:D.262, A:D.262, A:Y.265 Water bridges: A:P.171, A:D.262 Salt bridges: A:R.267 pi-Stacking: A:F.220, A:F.220

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: S.306, F.307 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.306

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, C. et al., Functional and structural characterization of the Trm11-Trm112 m2G10 tRNA methyltransferase complex. Nucleic Acids Res. (2020)

Release Date

2020-09-23

Peptides

tRNA (Guanine(10)-N2)-dimethyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

tRNA (Guanine(10)-N2)-dimethyltransferase

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