- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.19 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x SFG: SINEFUNGIN(Non-covalent)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 4 residues within 4Å:- Chain A: F.206, K.233, L.264
- Ligands: SFG.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.233, A:K.233
EDO.3: 7 residues within 4Å:- Chain A: L.252, A.258, G.259, T.260, L.261, D.262, I.288
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.259, A:L.261, A:D.262
EDO.4: 5 residues within 4Å:- Chain A: I.160, K.161, L.164, E.305, R.313
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:A.159, A:K.161, A:R.313, A:R.313
- Water bridges: A:K.161
EDO.5: 5 residues within 4Å:- Chain A: E.219, I.223, E.224, G.225
- Chain B: K.2
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.224, A:G.225
EDO.6: 5 residues within 4Å:- Chain A: E.219, Y.220, Y.221, G.222
- Ligands: EDO.11
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.219
EDO.7: 6 residues within 4Å:- Chain A: R.139, D.140, Q.143, F.144, R.147, R.166
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.147, A:R.147, A:R.166, A:R.166
EDO.10: 5 residues within 4Å:- Chain A: M.1, F.3, Y.43, A.44, G.45
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.45
EDO.11: 3 residues within 4Å:- Chain A: Y.220, Y.221
- Ligands: EDO.6
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.220
EDO.12: 3 residues within 4Å:- Chain A: Y.32, Q.33, F.34
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.32, A:F.34, A:F.34
EDO.13: 4 residues within 4Å:- Chain A: K.92, G.93, A.96, L.97
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.97
- 2 x ACY: ACETIC ACID(Non-functional Binders)
ACY.8: 4 residues within 4Å:- Chain A: R.139, T.141, F.144, K.163
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:R.139, A:K.163
ACY.9: 7 residues within 4Å:- Chain A: G.195, G.198, I.199, N.200, P.201, I.223, E.224
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.200, A:E.224
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.14: 3 residues within 4Å:- Chain A: Y.80, D.81, R.82
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.81, A:D.81, A:R.82
- Salt bridges: A:R.82
SO4.15: 4 residues within 4Å:- Chain A: K.92, G.93, K.94, T.95
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.93, A:K.94, A:T.95
- Water bridges: A:A.96
- Salt bridges: A:K.92, A:K.94
- 1 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, C. et al., Functional and structural characterization of the Trm11-Trm112 m2G10 tRNA methyltransferase complex. Nucleic Acids Res. (2020)
- Release Date
- 2020-09-23
- Peptides
- tRNA (Guanine(10)-N2)-dimethyltransferase: A
Uncharacterized protein: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.19 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x SFG: SINEFUNGIN(Non-covalent)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x ACY: ACETIC ACID(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 1 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, C. et al., Functional and structural characterization of the Trm11-Trm112 m2G10 tRNA methyltransferase complex. Nucleic Acids Res. (2020)
- Release Date
- 2020-09-23
- Peptides
- tRNA (Guanine(10)-N2)-dimethyltransferase: A
Uncharacterized protein: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
H