SMTL ID : 6zyd.1

YnaI

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-heptamer

Ligands

7 x PEE: 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)

PEE.1: 20 residues within 4Å: Chain A: X.30, I.174, K.176, V.224, G.225, G.228, I.231, L.232, F.235, G.268, W.269, R.270 Chain E: I.185, I.189, A.223 Chain F: F.236, I.239, M.240, F.243, D.244 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain F Hydrophobic interactions: A:L.232, A:F.235, F:I.239, F:F.243 PEE.2: 20 residues within 4Å: Chain B: X.30, I.174, K.176, V.224, G.225, G.228, I.231, L.232, F.235, G.268, W.269, R.270 Chain C: F.236, I.239, M.240, F.243, D.244 Chain G: I.185, I.189, A.223 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:L.232, B:F.235, C:I.239, C:F.243 PEE.3: 20 residues within 4Å: Chain B: I.185, I.189, A.223 Chain C: X.30, I.174, K.176, V.224, G.225, G.228, I.231, L.232, F.235, G.268, W.269, R.270 Chain D: F.236, I.239, M.240, F.243, D.244 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: D:I.239, D:F.243, C:L.232, C:F.235 PEE.4: 20 residues within 4Å: Chain C: I.185, I.189, A.223 Chain D: X.30, I.174, K.176, V.224, G.225, G.228, I.231, L.232, F.235, G.268, W.269, R.270 Chain E: F.236, I.239, M.240, F.243, D.244 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain E Hydrophobic interactions: D:L.232, D:F.235, E:I.239, E:F.243 PEE.5: 20 residues within 4Å: Chain A: F.236, I.239, M.240, F.243, D.244 Chain D: I.185, I.189, A.223 Chain E: X.30, I.174, K.176, V.224, G.225, G.228, I.231, L.232, F.235, G.268, W.269, R.270 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain A Hydrophobic interactions: E:L.232, E:F.235, A:I.239, A:F.243 PEE.6: 20 residues within 4Å: Chain A: I.185, I.189, A.223 Chain F: X.30, I.174, K.176, V.224, G.225, G.228, I.231, L.232, F.235, G.268, W.269, R.270 Chain G: F.236, I.239, M.240, F.243, D.244 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain F Hydrophobic interactions: G:I.239, G:F.243, F:L.232, F:F.235 PEE.7: 20 residues within 4Å: Chain B: F.236, I.239, M.240, F.243, D.244 Chain F: I.185, I.189, A.223 Chain G: X.30, I.174, K.176, V.224, G.225, G.228, I.231, L.232, F.235, G.268, W.269, R.270 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain G Hydrophobic interactions: B:I.239, B:F.243, G:L.232, G:F.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Flegler, V.J. et al., The MscS-like channel YnaI has a gating mechanism based on flexible pore helices. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-11-25

Peptides

Low conductance mechanosensitive channel YnaI,Low conductance mechanosensitive channel YnaI: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
C

C
A

D
B

E
D

F
F

G
G

Membrane

We predict this structure to be a membrane protein.
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Low conductance mechanosensitive channel YnaI,Low conductance mechanosensitive channel YnaI