- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 3 x ACT: ACETATE ION(Non-functional Binders)
ACT.5: 5 residues within 4Å:- Chain A: A.134, R.180, S.184, K.187, Y.188
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:Y.188
- Hydrogen bonds: A:S.184, A:S.184
- Water bridges: A:R.180, A:R.180
- Salt bridges: A:R.180
ACT.6: 3 residues within 4Å:- Chain A: M.19, H.23
- Ligands: ZN.2
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:H.23
ACT.13: 3 residues within 4Å:- Chain B: H.23, E.24
- Ligands: ZN.11
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:E.24
- Salt bridges: B:H.23
- 2 x GLU: GLUTAMIC ACID(Non-covalent)
GLU.7: 11 residues within 4Å:- Chain A: Y.61, P.89, L.90, T.91, R.96, L.138, G.141, S.142, T.143, E.193, Y.220
13 PLIP interactions:11 interactions with chain A, 2 Ligand-Ligand interactions- Hydrophobic interactions: A:Y.61, A:L.138
- Hydrogen bonds: A:T.91, A:T.91, A:T.91, A:S.142, A:T.143, A:T.143, A:E.193, E.7, E.7
- Water bridges: A:E.193
- Salt bridges: A:R.96
GLU.14: 11 residues within 4Å:- Chain B: Y.61, P.89, L.90, T.91, R.96, L.138, G.141, S.142, T.143, E.193, Y.220
14 PLIP interactions:12 interactions with chain B, 2 Ligand-Ligand interactions- Hydrophobic interactions: B:Y.61, B:L.138
- Hydrogen bonds: B:T.91, B:T.91, B:T.91, B:S.142, B:T.143, B:T.143, E.14, E.14
- Water bridges: B:L.138, B:E.193, B:E.193
- Salt bridges: B:R.96
- 2 x QSZ: (4~{S})-4-cyclopropyl-7-fluoranyl-3,4-dihydro-2~{H}-thiochromene 1,1-dioxide(Non-covalent)
QSZ.8: 18 residues within 4Å:- Chain A: I.92, P.105, M.107, S.108, S.217, K.218, G.219
- Chain B: K.104, P.105, F.106, M.107, S.108, L.239, S.242, L.247
- Ligands: QSW.9, QSZ.15, QSW.16
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:L.247, A:P.105
QSZ.15: 18 residues within 4Å:- Chain A: K.104, P.105, F.106, M.107, S.108, L.239, S.242, L.247
- Chain B: I.92, P.105, M.107, S.108, S.217, K.218, G.219
- Ligands: QSZ.8, QSW.9, QSW.16
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:P.105, A:L.247
- 2 x QSW: (4~{R})-4-cyclopropyl-7-fluoranyl-3,4-dihydro-2~{H}-thiochromene 1,1-dioxide(Non-covalent)
QSW.9: 18 residues within 4Å:- Chain A: I.92, P.105, M.107, S.108, S.217, K.218, G.219
- Chain B: K.104, P.105, F.106, M.107, S.108, L.239, S.242, L.247
- Ligands: QSZ.8, QSZ.15, QSW.16
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:P.105, B:L.247, A:P.105
- Halogen bonds: A:M.107
QSW.16: 18 residues within 4Å:- Chain A: K.104, P.105, F.106, M.107, S.108, L.239, S.242, L.247
- Chain B: I.92, P.105, M.107, S.108, S.217, K.218, G.219
- Ligands: QSZ.8, QSW.9, QSZ.15
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:P.105, A:P.105, A:L.247
- Halogen bonds: B:M.107
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.17: 3 residues within 4Å:- Chain B: K.253, W.254, K.258
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.253
GOL.18: 2 residues within 4Å:- Chain B: K.116, K.185
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.116, B:K.185
- Water bridges: B:K.116
GOL.19: 4 residues within 4Å:- Chain A: N.214, D.216, S.217
- Chain B: D.248
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Water bridges: A:N.214, A:S.217
- Hydrogen bonds: B:D.248
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Etse, K.S. et al., Development of Thiochroman Dioxide Analogues of Benzothiadiazine Dioxides as New Positive Allosteric Modulators of alpha-Amino-3-hydroxy-5-methyl-4-isoxazolepropionic Acid (AMPA) Receptors. Acs Chem Neurosci (2021)
- Release Date
- 2021-08-11
- Peptides
- Glutamate receptor 2,Glutamate receptor 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 3 x ACT: ACETATE ION(Non-functional Binders)
- 2 x GLU: GLUTAMIC ACID(Non-covalent)
- 2 x QSZ: (4~{S})-4-cyclopropyl-7-fluoranyl-3,4-dihydro-2~{H}-thiochromene 1,1-dioxide(Non-covalent)
- 2 x QSW: (4~{R})-4-cyclopropyl-7-fluoranyl-3,4-dihydro-2~{H}-thiochromene 1,1-dioxide(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Etse, K.S. et al., Development of Thiochroman Dioxide Analogues of Benzothiadiazine Dioxides as New Positive Allosteric Modulators of alpha-Amino-3-hydroxy-5-methyl-4-isoxazolepropionic Acid (AMPA) Receptors. Acs Chem Neurosci (2021)
- Release Date
- 2021-08-11
- Peptides
- Glutamate receptor 2,Glutamate receptor 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
C