SMTL ID : 6zzz.2 (1 other biounit)

Crystal structure of yeast Sec62 cytoplasmic domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.54 Å

Oligo State

monomer

Ligands

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 3 residues within 4Å: Chain A: R.18, Q.19, F.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.19 Salt bridges: A:R.18

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: K.13, E.14, S.41, E.42, E.43 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.14, A:E.42 Salt bridges: A:K.13 SO4.3: 1 residues within 4Å: Chain A: H.40 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.40 Salt bridges: A:H.40 SO4.4: 2 residues within 4Å: Chain A: P.59, S.60 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.60 SO4.5: 3 residues within 4Å: Chain A: K.33, R.34, R.37 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.34 Salt bridges: A:K.33, A:R.34, A:R.37 SO4.6: 3 residues within 4Å: Chain A: R.18, K.87, P.105 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.18, A:K.87 SO4.7: 6 residues within 4Å: Chain A: R.18, F.29, R.31, R.34, K.87, Y.120 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.120 Water bridges: A:R.31, A:R.34 Salt bridges: A:R.18, A:R.31, A:R.34, A:K.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weng, T.H. et al., Architecture of the active post-translational Sec translocon. Embo J. (2021)

Release Date

2020-12-02

Peptides

Translocation protein SEC62: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Translocation protein SEC62

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