SMTL ID : 7ayn.1 (3 other biounits)

Crystal structure of the lectin domain of the FimH variant Arg98Ala, in complex with Methyl 3-chloro-4-D-mannopyranosyloxy-3-biphenylcarboxylate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x SBQ: methyl 3-[3-chloranyl-4-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-phenyl]benzoate(Non-covalent)

SBQ.1: 15 residues within 4Å: Chain A: F.1, I.13, G.14, N.46, D.47, Y.48, P.49, I.52, D.54, Q.133, N.135, Y.137, N.138, D.140, F.142 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.48, A:Y.48 Hydrogen bonds: A:F.1, A:D.47, A:D.54, A:Q.133, A:N.135, A:D.140, A:D.140 Water bridges: A:F.1, A:G.14 pi-Stacking: A:Y.48

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: T.57, E.89, T.90, P.91, R.92 No protein-ligand interaction detected (PLIP) EDO.3: 8 residues within 4Å: Chain A: A.2, C.3, K.4, A.10, I.11, C.44, H.45, D.100 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.45, A:D.100 Water bridges: A:I.11, A:H.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tomasic, T. et al., Does targeting Arg98 of FimH lead to high affinity antagonists?. Eur.J.Med.Chem. (2020)

Release Date

2020-12-23

Peptides

Type 1 fimbrin D-mannose specific adhesin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Type 1 fimbrin D-mannose specific adhesin

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