SMTL ID : 7btl.1

Mevo lectin complex with mannopentose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-heptamer

Ligands

3 x MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose

MAN-MAN-MAN-MAN.1: 8 residues within 4Å: Chain A: G.13, G.14, T.15, R.89, G.128, S.129, D.130, D.132 No protein-ligand interaction detected (PLIP) MAN-MAN-MAN-MAN.2: 8 residues within 4Å: Chain C: G.13, G.14, T.15, R.89, G.128, S.129, D.130, D.132 No protein-ligand interaction detected (PLIP) MAN-MAN-MAN-MAN.6: 8 residues within 4Å: Chain G: G.13, G.14, T.15, R.89, G.128, S.129, D.130, D.132 No protein-ligand interaction detected (PLIP)

1 x MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose

MAN-MAN-MAN.3: 2 residues within 4Å: Chain D: S.129 Ligands: MAN.9 No protein-ligand interaction detected (PLIP)

2 x MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose(Non-covalent)

MAN-MAN.4: 7 residues within 4Å: Chain E: G.13, G.14, R.89, G.128, S.129, D.130, D.132 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:G.14, E:G.128, E:S.129, E:D.130, E:D.130 MAN-MAN.5: 8 residues within 4Å: Chain F: G.13, G.14, R.89, A.127, G.128, S.129, D.130, D.132 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:G.14, F:G.128, F:S.129, F:D.130, F:D.130

2 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.7: 3 residues within 4Å: Chain B: G.128, S.129, D.130 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.129, B:D.130, B:D.130 MAN.9: 9 residues within 4Å: Chain D: G.13, G.14, T.15, R.89, G.128, S.129, D.130, D.132 Ligands: MAN-MAN-MAN.3 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:G.14, D:T.15, D:G.128, D:S.129, D:D.130, D:D.130

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 8 residues within 4Å: Chain C: T.7, E.8, V.9, G.10, Y.82, G.85 Chain D: K.30, E.64 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:G.10, C:G.10, C:G.85, D:K.30, D:K.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sivaji, N. et al., Structural and related studies on Mevo lectin from Methanococcus voltae A3: the first thorough characterization of an archeal lectin and its interactions. Glycobiology (2021)

Release Date

2021-02-03

Peptides

lectin: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
G

C
A

D
D

E
E

F
F

G
C

lectin

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