SMTL ID : 7c38.1

Crystal structure of AofleA from Arthrobotrys oligospora in complex with L-fucose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-dimer

Ligands

4 x FUC: alpha-L-fucopyranose(Non-covalent)

FUC.1: 10 residues within 4Å: Chain A: R.98, E.110, C.112, Y.123, G.125, A.126, L.127, L.150, F.166, W.172 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.150, A:F.166 Hydrogen bonds: A:R.98, A:E.110, A:Y.123, A:A.126, A:L.127 Water bridges: A:D.124 Salt bridges: A:R.98 FUC.4: 9 residues within 4Å: Chain A: R.193, R.204, E.216, G.227, Q.228, F.229, N.269, W.273 Ligands: FUL.3 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:E.216, A:Q.228, A:F.229 Water bridges: A:R.204, A:R.225, A:R.225, A:R.225, A:R.225 Salt bridges: A:R.204 FUC.7: 10 residues within 4Å: Chain B: R.98, E.110, C.112, Y.123, G.125, A.126, L.127, L.150, F.166, W.172 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.150, B:F.166 Hydrogen bonds: B:R.98, B:E.110, B:A.126, B:L.127 Water bridges: B:Y.123, B:D.124 Salt bridges: B:R.98 FUC.10: 9 residues within 4Å: Chain B: R.193, R.204, E.216, G.227, Q.228, F.229, N.269, W.273 Ligands: FUL.9 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:E.216, B:Q.228, B:Q.228, B:F.229 Water bridges: B:R.204, B:R.204, B:R.225, B:R.225, B:R.225 Salt bridges: B:R.204

4 x FUL: beta-L-fucopyranose(Non-covalent)

FUL.2: 6 residues within 4Å: Chain A: R.151, E.163, A.176, P.201, W.219, W.224 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.201, A:W.219 Hydrogen bonds: A:E.163 Salt bridges: A:R.151 FUL.3: 10 residues within 4Å: Chain A: R.193, R.204, E.216, R.225, G.227, Q.228, F.229, N.269, W.273 Ligands: FUC.4 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:E.216, A:Q.228, A:F.229 Water bridges: A:R.204, A:R.225, A:R.225, A:R.225, A:R.225 Salt bridges: A:R.204, A:R.225 FUL.8: 6 residues within 4Å: Chain B: R.151, E.163, A.176, P.201, W.219, W.224 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:P.201, B:W.219 Hydrogen bonds: B:E.163 Water bridges: B:W.224 Salt bridges: B:R.151 FUL.9: 11 residues within 4Å: Chain B: R.193, R.204, E.216, V.218, R.225, G.227, Q.228, F.229, N.269, W.273 Ligands: FUC.10 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:E.216, B:Q.228, B:F.229 Water bridges: B:R.204, B:R.204, B:R.225, B:R.225, B:R.225 Salt bridges: B:R.204, B:R.225

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain A: N.49, W.65, R.304, E.316, I.318, R.320 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.49, A:R.304, A:R.304 Water bridges: A:G.46, A:W.69, A:E.316, A:E.316, A:R.320, A:H.329 GOL.6: 8 residues within 4Å: Chain A: Q.228, F.229, V.230, I.231, S.267, W.273, K.274, P.276 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.228, A:V.230, A:V.230, A:K.274 GOL.11: 5 residues within 4Å: Chain B: N.49, W.65, R.304, E.316, I.318 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.49, B:R.304, B:Y.306, B:Y.306, B:R.320 Water bridges: B:G.46, B:W.69, B:E.316 GOL.12: 8 residues within 4Å: Chain B: Q.228, F.229, V.230, I.231, S.267, W.273, K.274, P.276 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.228, B:V.230, B:V.230, B:S.267, B:K.274

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, M. et al., Structural insights into the fungi-nematodes interaction mediated by fucose-specific lectin AofleA from Arthrobotrys oligospora. Int.J.Biol.Macromol. (2020)

Release Date

2020-07-29

Peptides

AofleA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

AofleA

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