SMTL ID : 7ckj.1

Crystal structure of CMP kinase in complex with CMP from Thermus thermophilus HB8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x C5P: CYTIDINE-5'-MONOPHOSPHATE(Non-covalent)

C5P.1: 13 residues within 4Å: Chain A: S.11, K.15, S.33, G.34, Y.37, R.38, V.97, A.101, R.107, G.125, R.126, D.127, M.128 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:R.126 Hydrogen bonds: A:S.33, A:R.107, A:R.107, A:R.126, A:R.126, A:D.127, A:D.127 Water bridges: A:S.16, A:S.16, A:Y.37, A:R.153, A:R.153, A:R.153, A:R.153 Salt bridges: A:K.15, A:R.38, A:R.126 pi-Stacking: A:Y.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mega, R. et al., The crystal structures of Thermus thermophilus CMP kinase complexed with a phosphoryl group acceptor and donor. PLoS ONE (2020)

Release Date

2020-07-29

Peptides

Cytidylate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytidylate kinase

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