SMTL ID : 7eqw.1

Crystal structure of capsid P domain of norovirus GI.3 DSV complexed with NA2 N-glycan

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

1 x MAN- NAG- GAL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose

MAN-NAG-GAL.1: 7 residues within 4Å: Chain A: D.114, H.116, S.170, P.171, V.172, S.173, Q.175 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:H.116, A:S.170, A:S.170, A:Q.175, A:Q.175 Water bridges: A:Q.175, B:S.128, B:T.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, C. et al., Structural Insight into Terminal Galactose Recognition by Two Non-HBGA Binding GI.3 Noroviruses. J.Virol. (2022)

Release Date

2022-05-04

Peptides

Capsid protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Capsid protein

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