SMTL ID : 7er1.1 (1 other biounit)

Crystal structure of capsid P domain of norovirus GI.3 VA115 complexed with Gala1-3Galb1-4Glc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

1 x GAL- GLA: alpha-D-galactopyranose-(1-3)-beta-D-galactopyranose(Non-covalent)

GAL-GLA.1: 7 residues within 4Å: Chain A: D.114, H.116, N.135, S.171, P.172, A.173, S.174 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.116, A:N.135, A:S.171, A:S.171 Water bridges: A:P.172, A:G.176

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, C. et al., Structural Insight into Terminal Galactose Recognition by Two Non-HBGA Binding GI.3 Noroviruses. J.Virol. (2022)

Release Date

2022-05-11

Peptides

capsid P domain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

capsid P domain

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