SMTL ID : 7olw.1

Structure of the N-terminal domain of BC2L-C lectin (1-131) in complex with a synthetic beta-N-fucoside ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

homo-trimer

Ligands

3 x VJW: 5-(3-aminophenyl)furan-2-carboxamido-(beta-L-fucopyranose)(Non-covalent)

VJW.1: 13 residues within 4Å: Chain A: Y.61, D.73, G.74, T.77, R.114 Chain B: T.49, Y.51, S.85, T.86, G.87, R.88, D.121, S.122 13 PLIP interactions: 8 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:D.73, A:T.77, A:R.114, A:R.114, B:T.86, B:R.88 Water bridges: A:D.73, A:T.77, A:K.111, B:S.85 pi-Stacking: A:Y.61 Hydrophobic interactions: B:T.49, B:Y.51 VJW.2: 13 residues within 4Å: Chain B: Y.61, D.73, G.74, T.77, R.114 Chain C: T.49, Y.51, S.85, T.86, G.87, R.88, D.121, S.122 13 PLIP interactions: 8 interactions with chain B, 5 interactions with chain C Hydrogen bonds: B:D.73, B:T.77, B:R.114, B:R.114, C:T.86, C:R.88 Water bridges: B:D.73, B:T.77, B:K.111, C:S.85 pi-Stacking: B:Y.61 Hydrophobic interactions: C:T.49, C:Y.51 VJW.3: 13 residues within 4Å: Chain A: T.49, Y.51, S.85, T.86, G.87, R.88, D.121, S.122 Chain C: Y.61, D.73, G.74, T.77, R.114 14 PLIP interactions: 8 interactions with chain C, 6 interactions with chain A Hydrogen bonds: C:D.73, C:T.77, C:R.114, C:R.114, A:T.86, A:R.88 Water bridges: C:Y.61, C:D.73, C:K.111, A:S.85, A:S.85 pi-Stacking: C:Y.61 Hydrophobic interactions: A:T.49, A:Y.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bermeo, R. et al., Targeting a Multidrug-Resistant Pathogen: First Generation Antagonists of Burkholderia cenocepacia 's BC2L-C Lectin. Acs Chem.Biol. (2022)

Release Date

2022-06-01

Peptides

Lectin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
AAA

C
AAA

Lectin

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