- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 2 residues within 4Å:- Chain A: K.57, E.59
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.57
GOL.3: 8 residues within 4Å:- Chain A: E.122, G.123, V.124, T.125, M.136, L.137, S.138, R.141
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.123, A:V.124, A:T.125, A:L.137
GOL.4: 7 residues within 4Å:- Chain A: P.58, E.59, R.62, G.96, W.97, D.98, R.99
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.98, A:D.98, A:R.99
GOL.5: 7 residues within 4Å:- Chain A: V.47, T.49, A.55, L.56, T.287, I.353
- Ligands: QTQ.6
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:V.47, A:T.49, A:L.56
- Water bridges: A:T.287
GOL.10: 2 residues within 4Å:- Chain B: K.57, E.59
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.57, B:E.59
GOL.11: 8 residues within 4Å:- Chain B: E.122, G.123, V.124, T.125, M.136, L.137, S.138, R.141
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.122, B:G.123, B:V.124, B:L.137
GOL.12: 7 residues within 4Å:- Chain B: P.58, E.59, R.62, G.96, W.97, D.98, R.99
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.98, B:D.98, B:R.99
GOL.13: 7 residues within 4Å:- Chain B: V.47, T.49, A.55, L.56, T.287, I.353
- Ligands: QTQ.14
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:V.47, B:T.49, B:L.56
- Water bridges: B:T.287
- 4 x QTQ: (3~{R},4~{R})-1,1-bis(oxidanylidene)thiolane-3,4-diol(Non-covalent)
QTQ.6: 12 residues within 4Å:- Chain A: G.48, T.49, A.50, A.51, A.55, L.56, P.58, V.61, I.69, M.95, W.97
- Ligands: GOL.5
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.49, A:T.49
- Water bridges: A:T.52, A:L.56
QTQ.7: 5 residues within 4Å:- Chain A: M.77, G.81, A.82, E.83, H.135
No protein-ligand interaction detected (PLIP)QTQ.14: 12 residues within 4Å:- Chain B: G.48, T.49, A.50, A.51, A.55, L.56, P.58, V.61, I.69, M.95, W.97
- Ligands: GOL.13
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.49, B:T.49
- Water bridges: B:T.52, B:L.56
QTQ.15: 5 residues within 4Å:- Chain B: M.77, G.81, A.82, E.83, H.135
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:H.135
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.8: 7 residues within 4Å:- Chain A: G.107, M.111, F.157, D.158, E.159, S.160, W.180
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.160, A:S.160
EDO.16: 7 residues within 4Å:- Chain B: G.107, M.111, F.157, D.158, E.159, S.160, W.180
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.160, B:S.160
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nguyen, D. et al., Targeting a Cryptic Pocket in a Protein-Protein Contact by Disulfide-Induced Rupture of a Homodimeric Interface. Acs Chem.Biol. (2021)
- Release Date
- 2021-06-16
- Peptides
- Queuine tRNA-ribosyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 4 x QTQ: (3~{R},4~{R})-1,1-bis(oxidanylidene)thiolane-3,4-diol(Non-covalent)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nguyen, D. et al., Targeting a Cryptic Pocket in a Protein-Protein Contact by Disulfide-Induced Rupture of a Homodimeric Interface. Acs Chem.Biol. (2021)
- Release Date
- 2021-06-16
- Peptides
- Queuine tRNA-ribosyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A