SMTL ID : 7a11.1 (1 other biounit)

LppS with covalent adduct derived from 1E

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x XL3: propane-1-thiol(Non-covalent)

XL3.1: 5 residues within 4Å: Chain A: Y.169, S.182, G.183, H.203, C.205 No protein-ligand interaction detected (PLIP)

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: D.110, N.111, N.230 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:N.230 Hydrogen bonds: A:D.110 Water bridges: A:K.113 Salt bridges: A:K.113 ACT.3: 5 residues within 4Å: Chain A: M.8, E.19, P.20, A.22, R.60 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:M.8, A:A.22 Salt bridges: A:R.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martelli, G. et al., N-Thio-beta-lactams targeting L,D-transpeptidase-2, with activity against drug-resistant strains of Mycobacterium tuberculosis. Cell Chem Biol (2021)

Release Date

2021-04-21

Peptides

L,D-transpeptidase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

L,D-transpeptidase 2

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