SMTL ID : 7a17.3 (2 other biounits)

Crystal structure of the 5-phosphatase domain of Synaptojanin1 bound to its substrate diC8-PI(3,4,5)P3 in complex with a nanobody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: E.63, Y.256, K.257, R.272 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.257, A:R.272

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Paesmans, J. et al., A structure of substrate-bound Synaptojanin1 provides new insights in its mechanism and the effect of disease mutations. Elife (2020)

Release Date

2020-12-30

Peptides

Isoform 2 of Synaptojanin-1: A
Nanobody 13015: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Isoform 2 of Synaptojanin-1

Nanobody 13015

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